Publications
- Francisco Solis, Ralph Bash, Hongda Wang, J. Yodh, Stuart Lindsay, Dennis Lohr. Effects of Histone Acetylation on Properties of Nucleosomes in MMTV and 5S Arrays. Biochemistry (2007).
- H Wang, R Bash, Dennis Lohr. Two-component Atomic Force Microscopy Recognition Imaging of Complex Samples. Anal. Biochem (2007).
- R Bash, H Wang, C Anderson, J Yodh, G Hager, Dennis Lohr, S Lindsay. AFM Imaging of Protein Movemnents: histone H2A-H2B Release During Nucleosome Remodeling. FEBS Letters (2006).
- W Marcus, H Wang, Dennis Lohr, M Sierks, S Lindsay. Isolation of an scFv Targeting BRG1 Using Phage Display with Characterization by AFM. Biochemistry and Bioophysical Research Communications (2006).
- D LoVullo, D Daniel, J Yodh, Dennis Lohr, Neal Woodbury. A Fluorescence resonance energy transfer-based probe to monitor nucleosome structure. Analytical Biochemistry (2005).
- H Wang, R Bash, S Lindsay, Dennis Lohr. Solution AFM studies of human Swi-Snf and its interactions with MMTV DNA and chromatin. Biophysical J (2005).
- Bash, R, Lohr, Dennis Evan. The Yeast GAL1-10. System Encyclopedia of Biological Chemistry (2004).
- C Stroh, H Wang, R Bash, B Ashcroft, J Nelson, H Gruber, Dennis Lohr, S Lindsay, P Hinterdorfer. Single Molecule Recognition Imaging Microscopy. Proc. Natl. Acad Sci. USA (2004).
- F Solis, R Bash, J Yodh, S Lindsay, Dennis Lohr. A Statistical Thermodynamic Model Applied to Experimental AFM Population and Location Data Is Able to Quantify DNA-Histone Binding Strength and Internucleosomal Interaction Differences. Biophysical J (2004).
- H Wang, R Bash, J Yodh, G Hager, S Lindsay, Dennis Lohr. Using AFM To Study Nucleosome Remodeling on Individual Nucleosomal Arrays In Situ. Biophysical J (2004).
- J Babendure, Dennis Lohr, Neal Woodbury, P Liddell, R Bash, D LoVullo, T Schiefer, M Williams, D Daniel, M Thompson, A Taguchi. Development of a Fluorescent Probe for the Study of Nucleosome Assembly and Dynamics. Analytical Biochemistry (2003).
- R Bash, H Wang, J Yodh, G Hager, S Lindsay, Dennis Lohr. Nucleosomal Arrays Can Be Salt-Reconstituted on a Single-Copy MMTV Promoter DNA Template: Their Properties Differ in Several Ways from Those of Comparable 5S Concatameric Arrays. Biochemistry (2003).
- H Wang, R Bash, J Yodh, G Hager, Dennis Lohr, S Lindsay. Glutaraldehyde Modified Mica: A New Surface for Atomic Force Microscopy of Chromatin. Biophys. J (2002).
- J Yodh, Neal Woodbury, L Shlyakhtenko, Y Lyubchenko, Dennis Lohr. Mapping nucleosome locations on the 208-12 by AFM provides clear evidence for cooperativity in array occupation. Biochemistry (2002).
- R Bash, Dennis Lohr. Yeast Chromatin Structure and the Regulation of GAL Gene Expression. Progr. Nuc. Acids Res. & Mol. Bio (2001).
- R Bash, J Vargason, S Cornejo, P Ho, Dennis Lohr. Intrinsically Bent DNA in the Promoters of the GAL1-10 and GAL80 Genes. J. Biol. Chem (2001).
- R Bash, J Yodh, Y Lyubchenko, N Woodbury, Dennis Lohr. Population Analysis of Subsaturated 172-12 Nucleosomal Arrays by Atomic Force Microscopy Detects Nonrandom Behavior That is Favored by Histone Acetylation and Short Repeat Length. J. Biol. Chem (2001).
- S Leuba, J Zlatanova, M Karymov, R Bash, Y Liu, Dennis Lohr, R Harrington, Stuart Lindsay. The mechanical properties of single chromatin fibers under tension. Single Molecules (2000).
- X Feng, R Bash, P Balagurumoorthy, Dennis Lohr, R Harrington, S Lindsay. Conformational Transition in DNA on a Cold Surface. Nuc. Acids Res (2000).
Research Activity
- Woodbury,Neal Walter*, Lindsay,Stuart, Lindsay,Stuart, Lohr,Dennis Evan. CAA: Factor Binding Dynamics on Promoters. SFAz(3/30/2007 - 9/30/2008).
- Woodbury,Neal Walter*, Lohr,Dennis Evan, Thorpe,Michael F, Thorpe,Michael F. SGER: Merging Single Molecule Spectroscopy and Molecular Simulation. NSF-MPS-PHY(6/1/2006 - 5/31/2007).
- Woodbury,Neal Walter*, Lohr,Dennis Evan. CHARACTERIZATION OF DNA/PROTEIN INTERACTIONS AT THE SINGLE MOLECULE LEVEL. NSF-MPS(7/1/2003 - 5/31/2005).
- Woodbury,Neal Walter*, Lohr,Dennis Evan, Taguchi,Aileen Kazuko. CHARACTERIZATION OF DNAPROTEIN INTERACTIONS AT THE SINGLE MOLECULE LEVEL. NSF-MPS(7/1/2003 - 6/30/2006).
- Lindsay,Stuart*, Lindsay,Stuart*, Lohr,Dennis Evan. NEW SPM METHODS TO STUDY CHROMATIN REMODELING. HHS-NIH-NCI(4/1/2001 - 3/31/2007).
- Lohr,Dennis Evan*. HISTONE MODIFICATIONS & TRANSCRIPTION FACTOR BINDING. AMER CANCER SOCIETY (ACS)(5/2/1996 - 12/31/1997).
- Lohr,Dennis Evan*. STRUCTURAL ANALYSIS OF RIBOSOMAL CHROMATIN. HHS(12/1/1989 - 11/30/1991).
- Lohr,Dennis Evan*. STRUCTURAL ANALYSIS OF RIBOSOMAL CHROMATIN. HHS(12/1/1988 - 11/30/1989).
- Lohr,Dennis Evan*. RCDA-COMBINED STRUCTURAL/FUNCTIONAL ANALYSIS OF GENE CONTROL. HHS(8/1/1988 - 7/31/1989).
- Lohr,Dennis Evan*. STRUCTURAL ANALYSIS OF RIBOSOMAL CHROMATIN - YEAR 2. HHS(12/1/1987 - 11/30/1988).
- Lohr,Dennis Evan*. RCDA: COMBINED STRUCTURAL/FUNCTIONAL ANLYS OF GENE CONTROL. HHS(8/1/1987 - 7/31/1988).
Presentations
- Kelbauskas, L, Chan, N, Daniel, D, Lohr, Dennis, Woodbury, N. In Vitro Investigations on Nucleosome Stability Using Single-Molecule Fluorescence Spectroscopy. Biophysical Society Meeting (Mar 2006).
- Bash, R, Wang, H, Marcus, W, Yodh, J, Hager, G, Lindsay, S, Lohr, Dennis. hSwi-Snf Studies with AFM Recognition Imaging. Annual AbCam Chromatin Structure and Function (Nov 2005).
- Wang, H, Bash, R, Lohr, Dennis, Lindsay, S. Molecular Recognition Imaging Applied to Chroamtin Remodeling. Biophysical Society Meeting (Feb 2005).
- Bash, R, Wang, H, Yodh, J, Lindsay, S, Lohr, Dennis. Atomic Force microscopy recognition imaging. 1st Annual AbCam Chromatin Structure and Function (Nov 2004).
- Bash, Ralph, Wang, H, Yodh, J, Lindsay, S, Lohr, Dennis. Recognition imaging of chromatin structure. 26th Annual West Coast Chromatin and Chromosomes Conference
- Lovullo, D, Daniel, D, Yodh, J, Lohr, Dennis, Woodbury, N. A FRET-based probe to monitor nucleosome conformational and sequence-dependent features. 26th Annual West Coast Chromatin and Chromosomes Conference
- Bash, R, Wang, H, Yodh, J, Hager, G, Lindsay, S, Lohr, Dennis. Histone H2A-H2B Release During hSwi-Snf Remodeling Detected by AFM Recognition Imaging. Annual West Coast Chromatin and Chromosomes Conference
Service
- Oral Exam Committee - Change Weng, Chair (2006 - Present)
- Oral Exam Committee - Lisha Lin, Member (2006 - Present)
- Oral Exam Committee - Brian Connolly, Member (2006 - Present)
- European Journal of Biophysics, Referee (2006 - 2006)
- Interdepartmental Relations Committee, Member (2006 - 2006)
- Microscopy, Referee (2006 - 2006)
- New faculty mentor, Committee of one, Mentor (2006 - 2006)
- Biophys. J, Referee (2003 - 2006)
- Embo J, Referee (2003 - 2006)
- FEBS Lett, Referee (2003 - 2006)
- MCB, Referee (2003 - 2006)
- National Science Foundation, External Reviewer for two panels (2006 - 2006)
- Undergraduate Programs, Chair (2005 - 2005)
- Third-year Review Committee, Member (2005 - 2005)
- Undergraduate Programs, Co-Chair (2004 - 2004)
- Nationa Science Foundation, External Reviewer for two panels (2004)
- Search Committee- Tenure-track Asst Prof, Chair (2004)
- Undergraduate Programs, Member (2004 - 2004)
- Search Committee, Chair (2003)
- Undergraduate Programs, Member (2003)
- NSF Panel "Biochemistry of Gene Expression", Panel Member (2003 - 2003)