Jeffrey Jensen

20 Representative Lab Publications:

• Soni, Pfeifer, & Jensen. 2024. The effect of mutation and recombination rate heterogeneity on the inference of demography and the distribution of fitness effects. Genome Biology & Evolution.
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• Soni, Johri, & Jensen. 2023. Evaluating power to detect recurrent selective sweeps under increasingly realistic evolutionary null models. Evolution.
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• Johri, Pfeifer, & Jensen. 2023. Developing an evolutionary baseline model for humans: jointly inferring purifying selection with population history. Molecular Biology & Evolution.
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• Terbot, Johri, Liphardt, Soni, Pfeifer, Cooper, Good, & Jensen. 2023. Developing an appropriate evolutionary baseline model for the study of SARS-CoV-2 patient samples. PLoS Pathogens.
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• Charlesworth & Jensen. 2022. How can we resolve Lewontin’s Paradox? Genome Biology & Evolution.
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• Johri, Aquadro, Beaumont, Charlesworth, Excoffier, Eyre-Walker, Keightley, Lynch, McVean, Payseur, Pfeifer, Stephan, & Jensen. 2022. Recommendations for improving statistical inference in population genomics. PLoS Biology.
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• Johri, Charlesworth, Howell, Lynch, & Jensen. 2021. Revisiting the notion of deleterious sweeps. Genetics.
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• Charlesworth & Jensen. 2021. Effects of selection at linked sites on patterns of genetic variability. Annual Review of Ecology, Evolution, and Systematics.
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• Johri, Riall, Becher, Excoffier, Charlesworth, & Jensen. 2021. The impact of purifying and background selection on the inference of population history: problems and prospects. Molecular Biology & Evolution.
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• Johri, Charlesworth, & Jensen. 2020. Towards an evolutionarily appropriate null model: jointly inferring demography and purifying selection. Genetics.
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• Sackman, Harris, & Jensen. 2019. Inferring demography and selection in organisms characterized by skewed offspring distributions. Genetics.
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• Jensen, Payseur, Stephan, Aquadro, Lynch, Charlesworth, & Charlesworth. 2019. The importance of the Neutral Theory in 1968 and 50 years on: a response to Kern & Hahn 2018. Evolution.
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• Harris, Sackman, & Jensen. 2018. On the unfounded enthusiasm for soft selective sweeps II: examining recent evidence from humans, flies, and viruses. PLoS Genetics.
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• Matuszewski, Hildebrandt, Achaz, & Jensen. 2018. Coalescent processes with skewed offspring distributions and non-equilibrium demography. Genetics.
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• Bank, Matuszewski, Hietpas, & Jensen. 2016. On the (un)predictability of a large intragenic fitness landscape. PNAS.
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• Bank, Renzette, Liu, Matuszewski, Shim, Foll, Bolon, Zeldovich, Kowalik, Finberg, Wang, & Jensen. 2016. An experimental evaluation of drug induced mutational meltdown as an antiviral treatment strategy. Evolution.
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• Ewing & Jensen, 2016. The consequences of not accounting for background selection in demographic inference. Molecular Ecology.
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• Jensen. 2014. On the unfounded enthusiasm for soft selective sweeps. Nature Communications. 
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• Bank, Hietpas, Wong, Bolon, & Jensen. 2014. A Bayesian MCMC approach to assess the complete distribution of fitness effects of new mutations: uncovering the potential for adaptive walks in challenging environments. Genetics.
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• Foll, Poh, Renzette, Ferrer-Admetlla, Shim, Malaspinas, Ewing, Bank, Liu, Wegmann, Caffrey, Zeldovich, Bolon, Wang, Kowalik, Schiffer, Finberg, & Jensen. 2014. Influenza virus drug resistance: a time-sampled population genetics perspective. PLoS Genetics.