Sharon Crook

Selected Peer-reviewed Publications 

Berger, S, S Crook (2015) Modeling the influence of ion channels on neuron dynamics in Drosophila. Frontiers in Computational Neuroscience. 9:139. doi:10.3389/fncom/2015.00139.

Birgiolas, J, S Dietrich, S Crook, A Rajadesingan, C Zhang, S Velugoti Penchala, V Addepalli (2015) Ontology-assisted keyword search for NeuroML models. In Amarnath Gupta and Susan Rathbun, Eds, Proceedings of the 27th International Conference on Scientific and Statistical Database Management, ACM, New York, NY. Article 37. doi=10.1145/2791347.2791360.

Gardner, C, JR Jones, SM Baer, SM Crook (2014) Drift-diffusion simulation of the ephaptic effect in the triad synapse of the retina. Journal of Computational Neuroscience. 38:129-142.PubMed

Cannon, RC, P Gleeson, S Crook, G Gnapathy, B Marin, E Piasini, RA Silver (2014) LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2. Frontiers in Neuroinformatics. 8:79. PubMed

Vella, M, RC Cannon, S Crook, AP Davison, G Ganapathy, HPC Robinson, RA Silver, P Gleeson (2014) libNeuroML and PyLEMS: using Python to combine procedural and declarative modeing approaches in computational neuroscience. Frontiers in Neuroinformatics. 8:38. PubMed

Crook, SM, JA Bednar, SD Berger, RC Cannon, AP Davison, M Djurfeldt, J Eppler, B Kriener, S Furber, B Graham, M Hull, HE Plesser, L Schwabe, L Smith, V Steuber, S van Albada (2012) Creating, documenting and sharing network models. Network: Computation in Neural Systems.23(4):131-149. PubMed

Kurian, M, SM Crook, R Jung (2011) Motoneuron models of self-sustained firing after spinal cord injury. Journal of Computational Neuroscience. 31(3):625-645. PubMed, ModelDB

Gleeson, P, S Crook, R Cannon, M Hines, G Billings, M Farinella, TM Morse, A Davison, S Ray, U Bhalla, SR Barnes, YD Dimitrova and RA Silver (2010) NeuroML: a simulator-independent language for describing data-driven models of neurons and networks with a high degree of biological realism. PLoS Computational Biology. 6(6): e1000815. PubMed

Crook SM, M Dur-e-Ahmad and SM Baer (2007) A model of activity-dependent changes in dendritic spine density and spine structure. Mathematical Biosciences and Engineering. 4(4):617-631. PubMed, ModelDB

Crook, S, P Gleeson, F Howell, J Svitak and RA Silver (2007) MorphML: Level 1 of the NeuroML standards for neuronal morphology data and model specification. Neuroinformatics. 5(2):96-104. PubMed

Selected Book Chapters 

Crook, S, HE Plesser, A Davison (2013) Lessons from the past: approaches for reproducibility in computational neuroscience. In JM Bower, ed. 20 Years of Computational Neuroscience, Springer.

Gleeson, P, V Steuber, RA Silver and S Crook (2012) NeuroML. In Le Novere, ed. Computational Systems Biology, Springer.

Venugopal, S, S Crook, M Srivatsan and R Jung (2011) Principles of computational neuroscience. In Jung, ed. Biomimetic and Biohybrid Living-Hardware Systems, Wiley.

Crook, S and F Howell (2007) XML for data representation and model specification in neuroscience. in Crasto, ed. Methods in Molecular Biology Book Series: Neuroinformatics, Humana Press. PubMed