Sharon Crook

Selected Peer-reviewed Publications 

Haynes, VR, Y Zhou, S Crook (2024) Discovering optimal features for neuron type identification from extracellular recordings. Frontiers in Neuroinformatics. 18.1303993. DOI:10.3389/ninf.2024.1303993

Birgiolas, J, VR Haynes, P Gleeson, RC Gerkin, SW Dietrich, S Crook (2023)  NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML. PLoS Computational Biology. 19(3):e1010941. DOI:10.1371/journal.pcbi.1010941

Gleeson, P, S Crook, D Turner, K Mantel, M Raunak, T Willke, JD Cohen (2023) Integrating model development across computational neuroscience, cognitive science, and machine learning. Neuron. 111(10):1526-1530. DOI:10.1016/j.neuron.2023.03.037

Eriksson, O, US Bhalla, KT Blackwell, SM Crook, D Keller, A Kramer, M Linne, A Saudargiene, RC Wade, J Hellgren Kotaleski (2022) Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows. eLife. 11:e69013. DOI:10.7554/eLife.69013

Eke, DO, A Bernard, JG Bjaalie, R Chavarriaga, T Hanakawa, AJ Hannan, SL Hill, ME Martone, A McMahon, O Ruebel, S Crook, E Thiels, F Pestilli (2022) International Data Governance for Neuroscience. NEURON. 110(4):600-612. DOI:10.1016/j.neuron.2021.11.017

Baer, SM, S Chang, SM Crook, CL Gardner, JR Jones, C Ringhofer, FR Nelson (2021) A multiscale continuum model of the vertebrate outer retina: The temporal dynamics of background-induced flicker enhancement. Journal of Theoretical Biology. DOI:10.1016/j.jtbi.2021.110763.

Reckell, T, K Nguyen, *T Phan, SM Crook, E Kostelich, Y Kuang (2021) Modeling the synergistic properties of drugs in hormonal treatment for prostate cancer. Journal of Theoretial Biology. 514:110570. DOI:10:1016/j.jtbi.2020.110570

Ruhani, M, SM Baer, SM Crook (2021) A stage-structured population model for activity-dependent dendritic spines, Journal of Biological Dynamics. DOI:10.1080/17513758.2020.1839136

Gleeson, P, M Cantarelli, B Marin, A Quintana, M Earnshaw, S Sadeh, E Piasini, *J Birgiolas, RC Cannon, NA Cayco-Gajic, S Crook, AP Davison, S Dura-Bernal, A Ecker, ML Hines, G Idili, F Lanore, SD Larson, WW Lytton, A Mujumdar, RA McDougal, S Sivagnanam, S Solinas, R Stanislovas, SJ van Albada, W van Geit, RA Silver (2019) Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits. Neuron. DOI:10.1016/j.neuron.2019.05.019

Neal, M, M Koenig, D Nickerson, G Misirli, R Kalbasi, A Drager, K Atalag, V Chelliah, M Cooling, D Cook, S Crook, M de Alba, S Friedman, A Garny, J Gennari, P Gleeson, M Golebiewski, M Hucka, N Juty, C Myers, B Oivier, H Sauro, M Scharm, J Snoep, V Toure, A Wipat, O Wolkenhauer, D Waltemath (2018) Harmonizing semantic annotations for computational models in biology. Briefings in Bioinformatics. DOI:10.1093/bib/bby087

Gerkin, RC, *RJ Jarvis, SM Crook (2018) Towards systematic, data-driven validation of a collaborative, multi-scale model of C. elegans. Philosophical Transactions of the Royal Society B. 373:20170381. DOI:10.1098.rstb.2017.0381.

Berger, S, S Crook (2015) Modeling the influence of ion channels on neuron dynamics in Drosophila. Frontiers in Computational Neuroscience. 9:139. DOI:10.3389/fncom/2015.00139.

Gardner, C, JR Jones, SM Baer, SM Crook (2015) Drift-diffusion simulation of the ephaptic effect in the triad synapse of the retina. Journal of Computational Neuroscience. 38:129-142. DOI:10.1007/s10827-014-0531-7.

Cannon, RC, P Gleeson, S Crook, G Gnapathy, B Marin, E Piasini, RA Silver (2014) LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2. Frontiers in Neuroinformatics. 8:79. DOI:10.3389/fninf.2014.00079.

Vella, M, RC Cannon, S Crook, AP Davison, G Ganapathy, HPC Robinson, RA Silver, P Gleeson (2014) libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience. Frontiers in Neuroinformatics. 8:38. DOI:10.3389/fninf.2014.00038

Herrera-Valdez, M, EC McKiernan, *SD Berger, S Ryglewski, C Duch, S Crook (2013) Relating ion channel expression, bifurcation structure, and diverse firing patterns in a model of an identified motor neuron. Journal of Computational Neuroscience. 34(2):211-229. DOI:10.1007/s10827-012-0416-6

Crook, SM, JA Bednar, SD Berger, RC Cannon, AP Davison, M Djurfeldt, J Eppler, B Kreiner, S Furber, B Graham, M Hull, HE Plesser, L Schwabe, L Smith, V Steuber, S van Albada (2012) Creating, documenting and sharing network models. Network: Computation in Neural Systems. 23(4):131-149.

Kurian, M, SM Crook and R Jung (2011) Motoneuron models of self-sustained firing after spinal cord injury. Journal of Computational Neuroscience. 31(3):625-645.

Gleeson, P, S Crook, R Cannon, M Hines, G Billings, M Farinella, TM Morse, A Davison, S Ray, U Bhalla, SR Barnes, YD Dimitrova and RA Silver (2010) NeuroML: a simulator-independent language for describing data-driven models of neurons and networks with a high degree of biological realism. PLoS Computational Biology. 6(6): e1000815. DOI:10.1371/journal.pcbi.1000815.

Baer, SM, S Crook, M Dur-e-Ahmad and Z Jackiewicz (2009) Numerical solution of calcium-mediated dendritic branch model. Journal of Computational and Applied Mathematics. 229:416-424.

Crook, S, M Dur-e-Ahmad and SM Baer (2007) A model of activity-dependent changes in dendritic spine density and spine structure. Mathematical Biosciences and Engineering. 4:617-631.

Cummins, GI, SM Crook, AG Dimitrov, T Ganje, GA Jacobs and JP Miller (2003) Structural and biophysical mechanisms underlying dynamic sensitivity of primary sensory interneurons in the cricket cercal sensory system. Neurocomputing. 52:45-52.

Crook, S, J Miller and G Jacobs (2002) Modeling frequency encoding in the cricket cercal sensory system. Neurocomputing 44:769-773.

Crook, SM, GB Ermentrout and JM Bower. (1998) Spike frequency adaptation affects the synchronization properties of cortical networks. Neural Computation 10:837-854.

Crook, SM, GB Ermentrout and JM Bower (1998) Dendritic and synaptic effects in systems of coupled cortical oscillators. Journal of Computational Neuroscience 5:315-329.

Crook, SM, GB Ermentrout, MC Vanier and JM Bower (1997) The role of axonal delay in the synchronization of networks of coupled cortical oscillators. Journal of Computational Neuroscience 4:161-172.