Student Information
Graduate Student
Biology
The College of Lib Arts & Sci
Long Bio
Samyabrata (Sam) Sen is a Ph.D. student in Biology at the School of Life Sciences, Arizona State University, where he is advised by Dr. Abhishek Shrivastava. His research centers on the Type IX Secretion System (T9SS), a molecular machinery that powers gliding motility in bacteria like Flavobacterium johnsoniae and mediates key interactions between gut commensals like Bacteroides and their host. By combining microbiological experiments with computational analysis, Sam works to uncover the mechanisms that govern bacterial movement, adhesion, and decision-making, with implications for microbiome stability and human health.
Beyond the bench, Sam has developed open-source tools to accelerate microbial research, most notably RABiTPy, an AI-powered Python software for rapid bacterial tracking and analysis, published in BMC Bioinformatics. His interdisciplinary background spans Surface Enhanced Raman Spectroscopy (SERS) for mutation detection in crops, bioethanol production from agricultural waste, and computational siRNA design, experiences that equip him to approach complex biological questions from multiple angles.
A recipient of the 2025 Biodesign Fusion Award for Sustainability, Sam is equally committed to science communication and education, teaching undergraduate biology and microbiology courses at ASU. He aims to bridge experimental and computational approaches to advance our understanding of microbial behavior and its broader consequences for health and the environment.
Education
- Master of Science in Life Sciences from National Institute of Technology, Rourkela, India
- Bachelor of Science in Microbiology from West Bengal State University, India
Research Interests
Bacterial motility and adhesion, Type IX Secretion System (T9SS) biology, gut microbiome dynamics, host-microbe interactions, bioinformatics tool development, and AI-powered image analysis.
Research Group
Samyabrata Sen is a member of Dr. Abhishek Shrivastava’s lab at Biodesign Institute, Arizona State University, where research focuses on the molecular mechanisms underlying bacterial gliding motility and secretion systems. The lab combines live-cell microscopy, microbiology, and computational approaches to study how bacteria move, interact with surfaces, and communicate with their environment.
Publications
- Sen, S., Vairagare, I., Gosai, J., & Shrivastava, A. (2025). RABiTPy: an open-source Python software for rapid, AI-powered bacterial tracking and analysis. BMC bioinformatics, 26(1), 127.
- Sen, S., Chalapathi, D., Targolli, J., & Narayana, C. (2022). SERS combined with PCR as a potent tool for detecting mutations: a case study of tomato plants. RSC advances, 12(55), 35929-35937.
Graduate Faculties / Mentoring History
Served as a Teaching Assistant for BIO 181 (General Biology I) and MIC 205 (Microbiology) at Arizona State University